Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015934363.1_cds_XP_016480449.1_71887
CDS Infomation

[gene=LOC107801612] [db_xref=GeneID:107801612] [protein=DNA-(apurinic or apyrimidinic site) lyase, chloroplastic-like] [protein_id=XP_016480449.1] [location=join(82119..82168,82253..82406,82482..82564,84249..84328,84495..84752,84861..85186,86138..86245,86500..86637,86728..86775,87132..87212,89014..89173,89730..89851)] [gbkey=CDS]
Sequence

ATGTTACAATCTCTCAAATTAGGCCTATACAATTTCATTCATCCGAATAGTGTTGGAGTG
ATTTTAAGGAAACCCAAGTTTCAAGTTTTGGCTTCTGTGAATTTTACGATAATGGGGTCT
AAAAATAGACCCTTTTCAAGATTATCAGCTGTTGCAAAGTCAAATGAACCAATGAGCGTT
GCAGTTGAAAAGGGTGTTTCAAAGGAAAATGGTGACAAGGAGATTCTTGTGGAGGATATG
GAAACGGTAGAGAAAATGACAGTTCCACAGCTCAGAGTGAAACTTAGGAGTCTTGGGATT
CCTTCCAGAGGTACTAAACAAGAGCTTGTTGCTTCTCTGACGACATTCCTCAACAGCAAA
CTTAATGATGTAGGCAATGGAGCTGTGGCACGGGAGGATCAAGTATCATCTGACAAGAGT
CTAGGAGTAGCCGATAACACTTCAAAAAGGAAGGCTAGAAAAGTGTCAAGTAACCAAAGC
GATGTTGCTGCATCAGAGGTTTCTAGTACCAGGCAGACGAAAAAACGGGTGAAAAAAGAC
AACACCAAGGATACCAGTGTTGACATTATTGTTAAACAAGCTGAAATTACCCAGGAGCTC
TCCGCTGAATCTAATGACATCAAAGGCAAGAAGACTGTACGAGCAAAGAGAAAAGTTTCA
GCAGCGACTGCTTCGGCACACATTGAAGTTTCTGAGGGCGTGGATATTTCTGTAAATCAA
GATGAACCTTGGACTATTTTCGCTCACAAGAAGCCAAAAGATGGGTGGATTGTATACAAT
CCTAAAACAATGAGGCCGCCTCCTCTTTCTAAGGATACAAAACATGTTAAGTTATTGTCA
TGGAATGTCAATGGTTTGAGGGCTCTATTGAAGTTAAAGAATCTTTTGATACAGCAGCTT
GCCGATAGAGAAGATTTTGATGTTCTATGCTTACAGGAAACTAAATTACAGGATAAAGAT
GTTGAAGCGATCAAAGAAAGTCTCAGTGGCTATGAGAATAGCTTTTGGACATGCAGTGTC
GCTAAGCTTGGGTATTCTGGTACTGCAATCATCTCTCGGATCAAGCCACTTTCTGTCAGA
TATGGTCTCGGTATACCTGATCATGATACTGAAGGACGACTTGTCACGGTGGAATTTGAT
AACTTCTATTTACTGTGTGGATATGTTCCAAATTCTGGCGATGGACTACGGCGATTGACG
TACAGAATTACAGAGTGGGATCCTTCTCTCAGCAATTACATGAAAGAGCTAGAAAAGTCA
AAACCTGTTGTTTTGACCGGTGATCTAAATTGCGCCCACGAGGAGATAGATATTTATAAT
CCTGCTGGAAATAAAAGAAGTGCAGGCTTTACTGATGAAGAAAGACAGTCCTTTGAAACA
AACTTTTTAAACAAGGGGTTTGTAGATACATTCAGGAAGCAGCATCCTGGTGTCGTTGGT
TATACTTACTGGGGTTACCGCCATGGTGGACGTAAAACTAATAAAGGATGGCGGCTCGAC
TACTTCCTTGTCTCAGAACACATTGCTGACAACGTGCACGACTCCTACATTCTGCCAGAT
GTAGATGGCAGTGATCACAGTCCCATTGGCCTTATCCTGAAGCTGTAG

Peptide Sequence

PEP ID

XP_016480449.1
PEP Infomation

PREDICTED: DNA-(apurinic or apyrimidinic site) lyase, chloroplastic-like [Nicotiana tabacum]
Sequence

MLQSLKLGLYNFIHPNSVGVILRKPKFQVLASVNFTIMGSKNRPFSRLSAVAKSNEPMSV
AVEKGVSKENGDKEILVEDMETVEKMTVPQLRVKLRSLGIPSRGTKQELVASLTTFLNSK
LNDVGNGAVAREDQVSSDKSLGVADNTSKRKARKVSSNQSDVAASEVSSTRQTKKRVKKD
NTKDTSVDIIVKQAEITQELSAESNDIKGKKTVRAKRKVSAATASAHIEVSEGVDISVNQ
DEPWTIFAHKKPKDGWIVYNPKTMRPPPLSKDTKHVKLLSWNVNGLRALLKLKNLLIQQL
ADREDFDVLCLQETKLQDKDVEAIKESLSGYENSFWTCSVAKLGYSGTAIISRIKPLSVR
YGLGIPDHDTEGRLVTVEFDNFYLLCGYVPNSGDGLRRLTYRITEWDPSLSNYMKELEKS
KPVVLTGDLNCAHEEIDIYNPAGNKRSAGFTDEERQSFETNFLNKGFVDTFRKQHPGVVG
YTYWGYRHGGRKTNKGWRLDYFLVSEHIADNVHDSYILPDVDGSDHSPIGLILKL

Transcript Sequence

Gene sequence data has not been registered.